By now, you might be wondering why any other kind of MappingMapping is required at all. After all, why not simply write your own coordinate transformation functions in C, wrap them up in IntraMaps and do away with all the other Mapping classes in AST?
The reason is not too hard to find. Any transformation function you write is created solely by you, so it is a private extension which does not form a permanent part of AST. If you use it to calibrate some data and then pass that data to someone else, who has only the standard version of AST, then they will not be able to interpret it.
Thus, while an IntraMapIntraMap is fine for use by you and your collaborators (who we assume have access to the same transformation functions), it does not address the need for universal data exchange like other AST Mappings do. This is where the “Intra” in the class name “IntraMap” comes from, implying private or internal usage.
For this reason, it is unwise to store IntraMaps in datasets, unless they will be used solely for communication between collaborating items of software which share conventions about their use. A private database describing coordinate systems on a graphics device might be an example where IntraMaps would be suitable, because the data would probably never be accessed by anyone else's software. Restricting IntraMap usage to within a single program (i.e. never writing it out) is, of course, completely safe.
If, by accident, an IntraMap should happen to escape as part of a dataset, then the unsuspecting recipient is likely to receive an error message when they attempt to read the data. However, AST will associate details of the IntraMap's transformation function and its author (if provided) with the data, so that the recipient can make an intelligent enquiry to obtain the necessary software if this proves essential.